Sample Summary

Table 4 Sample Statistics
Statistic	Definition
Sample ID	IDs of samples reported on in the file.
Total PF Reads	The number of reads passing filter for the sample.
Percent Q30 Bases	The percentage of bases with a quality score of 30 or higher.

Table 5 Read Statistics
Statistic	Definition
Total Aligned Reads	The total number of reads passing filter present in the data set that aligned to the reference genome.
Percent Aligned Reads	The percentage of reads passing filter that aligned to the reference genome.

Table 6 Base Statistics
Statistic	Definition
Percent Q30 Bases	The percentage of bases with a quality score of 30 or higher.
Total Aligned Bases	The total number of bases present in the data set that aligned to the reference genome.
Percent Aligned Bases	Percent aligned bases in the target region.
Percent Mismatches	The average percentage of mismatches across both reads 1 and 2 over all cycles.

For Research Use Only. Not for use in diagnostic procedures.